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| Registros recuperados: 5.225 | |
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| Lafont, Maxime; Vergnes, Agnes; Vidal-dupiol, Jeremie; De Lorgeril, Julien; Gueguen, Yannick; Haffner, Philippe; Petton, Bruno; Chaparro, Cristian; Barrachina, Celia; Destoumieux-garzon, Delphine; Mitta, Guillaume; Gourbal, Benjamin; Montagnani, Caroline. |
| Over the last decade, innate immune priming has been evidenced in many invertebrate phyla. If mechanistic models have been proposed, molecular studies aiming to substantiate these models have remained scarce. We reveal here the transcriptional signature associated with immune priming in the oyster Crassostrea gigas. Oysters were fully protected against Ostreid herpesvirus 1 (OsHV-1), a major oyster pathogen, after priming with poly(I·C), which mimics viral double-stranded RNA. Global analysis through RNA sequencing of oyster and viral genes after immune priming and viral infection revealed that poly(I·C) induces a strong antiviral response that impairs OsHV-1 replication. Protection is based on a sustained upregulation of immune genes, notably genes... |
| Tipo: Text |
Palavras-chave: Innate immunity; Priming; OsHV-1; Antiviral response; Immune memory; Oyster; POMS; Poly(I·C); Interferon; Transcriptomic. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00614/72580/71541.pdf |
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| Fanget, Anne-sophie; Loncke, Lies; Pattier, France; Marsset, Tania; Roest, Walter; Tallobre, Cédric; Durrieu De Madron, Xavier; Hernandez Molina, F. Javier. |
| The Demerara Plateau, off the French Guiana and Surinam margin, corresponds to a prominent sub-horizontal marginal plateau. The interpretation of a large set of seismic data acquired along the Demerara Plateau and integration with previous seismic stratigraphy and drill studies enables a better understanding of the sedimentary evolution of the outer Demerara marginal plateau. Since the end of the transform activity (late Albian), three sedimentary evolutionary stages have been identified. 1) The Pre-contourite Stage (late Albian to early Miocene) is strongly controlled by the structure of the margin that influences the distribution pattern of post-transform deposits through differential thermal subsidence between transform and divergent segments. 2) The... |
| Tipo: Text |
Palavras-chave: Marginal plateau; Demerara Plateau; Contourite; Bottom currents; Mass transport deposits; Atlantic Ocean. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00599/71125/69439.pdf |
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| Desdouits, Marion; Wacrenier, Candice; Ollivier, Joanna; Schaeffer, Julien; Le Guyader, Soizick. |
| Human noroviruses (NoV) cause epidemics of acute gastroenteritis (AGE) worldwide and can be transmitted through consumption of contaminated foods. Fresh products such as shellfish can be contaminated by human sewage during production, which results in the presence of multiple virus strains, at very low concentrations. Here, we tested a targeted metagenomics approach by deep-sequencing PCR amplicons of the capsid (VP1) and polymerase (RdRp) viral genes, on a set of artificial samples and on shellfish samples associated to AGE outbreaks, to evaluate its advantages and limitations in the identification of strains from the NoV genogroup (G) II. Using artificial samples, the method allowed the sequencing of most strains, but not all, and displayed variability... |
| Tipo: Text |
Palavras-chave: Norovirus; Foodborne virus; Metagenomics; Amplicon deep sequencing; Viral diversity. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00646/75831/76818.pdf |
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| Donald, Julian; Roy, Mélanie; Suescun, Uxue; Iribar, Amaia; Manzi, Sophie; Péllissier, Léonie; Gaucher, Philippe; Chave, Jérôme. |
| 1.Community assembly theory assumes that ecological communities are spatially delimited into patches. Within these patches, coexistence results from environmental filtering, competition, and immigration. Truly delineated communities exist in laboratory studies of microbial cultures in Petri dishes, yet empirical tests conducted in continuous environments often use patches defined by convention as opposed to realised boundaries. 2.Here we perform a test of ecological community assembly rules using foliar endophyte communities from a tropical rainforest, where leaves are considered as patches for both fungal and bacterial communities. We determined the diversity of fungal and bacterial endophytes using environmental DNA sequencing of 365 top‐canopy leaves,... |
| Tipo: Text |
Palavras-chave: Bacteria; Distribution; French Guiana; Fungi; Metabarcoding; Plant–pathogen interactions; Rainforest. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00606/71808/70296.pdf |
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| Kadarusman,; Sugeha, Hagi Yulia; Pouyaud, Laurent; Hocdé, Régis; Hismayasari, Intanurfemi B.; Gunaisah, Endang; Widiarto, Santoso B.; Arafat, Gulam; Widyasari, Ferliana; Mouillot, David; Paradis, Emmanuel. |
| Coelacanth fishes of the genus Latimeria are the only surviving representatives of a basal lineage of vertebrates that originated more than 400 million years ago. Yet, much remains to be unveiled about the diversity and evolutionary history of these ‘living fossils’ using new molecular data, including the possibility of ‘cryptic’ species or unknown lineages. Here, we report the discovery of a new specimen in eastern Indonesia allegedly belonging to the species L. menadoensis. Although this specimen was found about 750 km from the known geographical distribution of the species, we found that the molecular divergence between this specimen and others of L. menadoensis was great: 1.8% compared to 0.04% among individuals of L. chalumnae, the other living... |
| Tipo: Text |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00603/71466/69921.pdf |
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| Bachiller, Eneko; Albo-puigserver, Marta; Giménez, Joan; Pennino, Maria Grazia; Marí-mena, Neus; Esteban, Antonio; Lloret-lloret, Elena; Jadaud, Angelique; Carro, Belén; Bellido, José María; Coll, Marta. |
| This work combines state-of-the-art methods (DNA metabarcoding) with classic approaches (visual stomach content characterization and stable isotope analyses of nitrogen (δ15N) and carbon (δ13C)) to investigate the trophic ecology of anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) at high taxonomic and spatial resolution in the Western Mediterranean Sea. Gut contents observed are in accordance with the dietary plasticity generally described for anchovy and sardine, suggesting a diet related to the opportunistic ingestion of available prey in a certain area and/or time. Genetic tools also showed modest inter-specific differences regarding ingested species. However, inter-specific and intra-specific differences in ingested prey frequencies... |
| Tipo: Text |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00656/76807/77975.pdf |
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| Landschuetzer, Peter; Laruelle, Goulven G.; Roobaert, Alizee; Regnier, Pierre. |
| In this study, we present the first combined open- and coastal-ocean pCO(2) mapped monthly climatology (Landschutzer et al., 2020b, https://doi.org/10.25921/qb25-f418, https://www.nodc.noaa.gov/ocads/oceans/MPI-ULB-SOM_FFN_clim.html, last access: 8 April 2020) constructed from observations collected between 1998 and 2015 extracted from the Surface Ocean CO2 Atlas (SOCAT) database. We combine two neural network-based pCO(2) products, one from the open ocean and the other from the coastal ocean, and investigate their consistency along their common overlap areas. While the difference between open- and coastal-ocean estimates along the overlap area increases with latitude, it remains close to 0 mu atm globally. Stronger discrepancies, however, exist on the... |
| Tipo: Text |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00676/78823/81149.pdf |
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| BONNET, A.; CURCIO, G. R.; CAVIGLIONE, J. H.; KACHAROUSKI, M.; PETRY, A. L.; DEBRINO, M. A.; BRUSTOLON, R.; KODAMA, A.. |
| A cobertura florestal original que abrangia, em grande parte, o oeste do Paraná pertence à unidade fitogeográfica Floresta Estacional Semidecidual e apresenta como característica singular a semidecidualidade de 20% a 80% das árvores do dossel. Com o decorrer do desenvolvimento e expansão agrícolas, as florestas foram severamente reduzidas e empobrecidas floristicamente nos remanescentes. Restaram florestas como áreas mais extensas apenas em unidades de conservação, além de terras indígenas, importantes espaços para a conservação de flora e fauna. As terras indígenas no município de Diamante D?Oeste, PR, proporcionam atualmente a manutenção de aproximadamente 1.500 ha de florestas, inclusive nas margens de importantes rios. Grande parte dessas terras foram... |
| Tipo: Livros |
Palavras-chave: Cobertura florestal; Floresta Estacional Semidecidual; Terra indígena; Floresta fluvial; Comunidade indígena; Política pública; Manejo; Preservação da Natureza; Vegetação Nativa. |
| Ano: 2020 |
URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/1124777 |
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| Geoffroy, Benjamain; Alfonso, Sebastien; Sadoul, Bastien; Blumstein, Daniel T. |
| Humans currently occupy all continents and by doing so, modify the environment and create novel threats to many species; a phenomenon known as human-induced rapid environmental changes (HIREC). These growing anthropogenic disturbances represent major and relatively new environmental challenges for many animals, and invariably alter selection on traits adapted to previous environments. Those species that survive often have moved from their original habitat or modified their phenotype through plasticity or genetic evolution. Based on the most recent advances in this research area, we predict that wild individuals with highly plastic capacities, relatively high basal stress level, and that are generally shy—in other words, individuals displaying a reactive... |
| Tipo: Text |
Palavras-chave: Coping style; Antipredator behavior; Evolution; Stress physiology; Ecology; Predation; Urbanization; Pollution. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00664/77564/79528.pdf |
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| Registros recuperados: 5.225 | |
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